Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015819994.1_cds_XP_016500225.1_14075
CDS Infomation

[gene=LOC107818709] [db_xref=GeneID:107818709] [protein=IQ domain-containing protein IQM2-like] [protein_id=XP_016500225.1] [location=join(35261..35643,35732..35846,35937..36002,36095..36183,36268..36358,36464..36703,36805..36906,36993..37667)] [gbkey=CDS]
Sequence

ATGGGGATATCGTTTTCGTGCCCATTTTCTTCTCATTGTGATTTGGAAAACAGTCTTGAA
TCTATTATTGTGAAGTCTATCAACTTTGGTGATAATGAACAGAAGACACTGTTACATTCC
ATTAGCTTCAAAAGCCAAGATTCTGAACCCATAGTAATGCAATCAGATGGTTCAGGAAAT
ATGTTGATAGAAAAATCTGTCAGTTTTAAGACAAAGGAAAATGCAATGGACATGTTTAGC
ATGAACGAAGAAACTCCGAAATCGCCTTTGGTATATAGTAACAGCCCAAAACATGAGGCA
GCTCTGAAATTGCAGAAAGTGTACAAGAGTTTTCGGACTAGACGAAAATTAGCAGATTGT
GCCGTTCTTATTGAGCAAAGTTGGTGGAAGCTATTAGATTTTGCAGAACTTAAACATAGT
TCTATTTCATTTTTTGATCTTGAGAAGCATGAGACTGCGATTTCGCGCTGGTCAAGAGCA
AGAACAAGAGCTGCCAAGGTAGGCAAAGGCTTATCTAAGAATGGCAAAGCACAGAAACTT
GCTTTACAACATTGGCTTGAAGCTATCGATCCAAGACATCGTTATGGACACAACTTGCAT
TTCTATTATGTTCAATGGTTGCATTCTCAAAGTAAAGAGCCCTTCTTCTACTGGTTGGAT
ATAGGAGAAGGCAAAGAAGTGAATCTTGTCGACAAATGCCCACGATGGAAACTTCAGCAG
CAATGCATCAAGTACCTTGGTCCGATGGAAAGAAAGGCTTATGAAGTTGTAGTGGAAGAT
GGGAAGCTTTTCTACAAGGAAACTGGGAAGGTACTTGACACAACTGGTGAACCAAAAGGT
GCTAAGTGGATATTTGTCCTTGGCACATCTAAAAACTTATATGTTGGAAAGAAAAAGAAA
GGATCATTTCAGCATTCCAGTTTCTTGTCCGGGGGCGCCACATTAGCTGCTGGAAGGATA
GTTGTGGAACAAGGAGAATTAAAGGCTGTTTGGCCTCATAGTGGACATTATCGACCTACT
CCAGAAAACTTTCAAGACTTCATTTCGTTTCTTAGGGAGAACGACGTTGACCTAAGTGAT
GTTAAGCTTGATTCTGTTGATGATGAAGATGATTCTATTGGCAAGAAGAATGGCGTATAC
TTCAGAGATAACTCTTCTGATGACGAAATAGCTCAAAAAGATGATCCAGAGATTACATTA
GAAGTCTCAACTTCAGAGAAAAATGAGTTGAAAGAACACGCGACGATGCCTGCTGCTTCA
CCACTTAACAAGTTAAGACCATCTCATAGCTTCAGTGACAAATTGCCTAATCTAAAAATA
CCAAGCCACGACGATTTACTAGAGAGATTAAAGAATGAAAATGAAACCGTTAAACTAGAA
TCACCAACAGATGGATATGAATCAGCTAGAGAGTTATTTGCTTCTGAACAAGACAGTAAA
GAAGAGACAATTCCACAAGAATGTATACTCCAGAGGATAAATTCACATAAAGAAATGAAG
TCATTTCAATTAGGAAAGCAACTGTCTTGTAAATGGAGTACTGGAGCTGGACCTCGAATC
GGATGCTTGAGAGATTACCCTTCACAGCTACAATCTCATGCATTAGAAGAAGTGAACTTA
TCCCCTAGAAGTGCTCGTCGTCTCAATTTTTATTCGAGGTCATCAACCCCAACGAGCTTT
AGCAGAGAAATGCAAGAGCCTTTTCTGCATTCGCCTCATGACTCAAGAAGACATTCCTCT
CCATTTTGTAAAGGACTCTAA

Peptide Sequence

PEP ID

XP_016500225.1
PEP Infomation

PREDICTED: IQ domain-containing protein IQM2-like [Nicotiana tabacum]
Sequence

MGISFSCPFSSHCDLENSLESIIVKSINFGDNEQKTLLHSISFKSQDSEPIVMQSDGSGN
MLIEKSVSFKTKENAMDMFSMNEETPKSPLVYSNSPKHEAALKLQKVYKSFRTRRKLADC
AVLIEQSWWKLLDFAELKHSSISFFDLEKHETAISRWSRARTRAAKVGKGLSKNGKAQKL
ALQHWLEAIDPRHRYGHNLHFYYVQWLHSQSKEPFFYWLDIGEGKEVNLVDKCPRWKLQQ
QCIKYLGPMERKAYEVVVEDGKLFYKETGKVLDTTGEPKGAKWIFVLGTSKNLYVGKKKK
GSFQHSSFLSGGATLAAGRIVVEQGELKAVWPHSGHYRPTPENFQDFISFLRENDVDLSD
VKLDSVDDEDDSIGKKNGVYFRDNSSDDEIAQKDDPEITLEVSTSEKNELKEHATMPAAS
PLNKLRPSHSFSDKLPNLKIPSHDDLLERLKNENETVKLESPTDGYESARELFASEQDSK
EETIPQECILQRINSHKEMKSFQLGKQLSCKWSTGAGPRIGCLRDYPSQLQSHALEEVNL
SPRSARRLNFYSRSSTPTSFSREMQEPFLHSPHDSRRHSSPFCKGL

Transcript Sequence

Gene sequence data has not been registered.